STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ51567.1Ribose ABC transporter permease protein. (299 aa)    
Predicted Functional Partners:
OIQ51566.1
ABC transporter substrate binding protein.
    0.987
OIQ49855.1
ABC transporter substrate binding protein.
    0.984
ecfA2_1
Energy-coupling factor transporter ATP-binding protein EcfA2.
 
    0.982
OIQ52059.1
Blue-light-activated protein.
  
  
 0.669
OIQ49776.1
Hypothetical protein.
  
  
 0.668
ndk
Nucleoside diphosphate kinase.
       0.601
proC
Pyrroline-5-carboxylate reductase.
       0.596
corC_1
Magnesium and cobalt efflux protein CorC.
   
    0.482
ybeZ_2
PhoH-like protein.
   
    0.482
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.