STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoDRNA polymerase sigma factor RpoD. (583 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta.
 
 0.993
rpoA
DNA-directed RNA polymerase subunit alpha.
 
 0.990
rpoC
DNA-directed RNA polymerase subunit beta'.
 
 0.986
rpoZ
DNA-directed RNA polymerase subunit omega.
 
 
 0.983
dnaG
DNA primase.
 
  
 0.967
OIQ51360.1
Hypothetical protein; Transcription termination/antitermination protein NusA.
 
 
 0.943
carD
RNA polymerase-binding transcription factor CarD.
 
 
 
 0.905
crp_3
cAMP receptor protein.
    
 
 0.905
ada
Bifunctional transcriptional activator/DNA repair enzyme Ada.
  
 
 0.867
dnaK
Chaperone protein DnaK.
  
 
 0.854
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.