STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutS2Endonuclease MutS2. (765 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21.
 
 
   0.965
rpsF
30S ribosomal protein S6.
  
 
   0.857
rplU
50S ribosomal protein L21.
 
 
   0.854
rplR
50S ribosomal protein L18.
  
 
   0.844
rplT
50S ribosomal protein L20.
   
   0.843
rpmI
50S ribosomal protein L35.
   
   0.843
rpmB
50S ribosomal protein L28.
   
 
 0.843
rpsD
30S ribosomal protein S4.
    
   0.843
rpsO
30S ribosomal protein S15.
   
   0.836
rpmA
50S ribosomal protein L27.
   
 
 0.834
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.