STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrG_1CTP synthase. (545 aa)    
Predicted Functional Partners:
guaA_2
GMP synthase [glutamine-hydrolyzing].
  
 0.947
rplM
50S ribosomal protein L13.
   
 
 0.928
rpsB
30S ribosomal protein S2.
  
 0.912
rplF
50S ribosomal protein L6.
   
 
 0.911
rplE
50S ribosomal protein L5.
   
 
 0.910
rplC
50S ribosomal protein L3.
   
 0.905
rplW
50S ribosomal protein L23.
   
 
 0.904
eno
Enolase.
 
 
 0.903
rplJ
50S ribosomal protein L10.
   
 
 0.900
rpmD
50S ribosomal protein L30.
   
   0.898
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.