Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OIQ49332.1 | dnaX_1 | BerOc1_01257 | BerOc1_00093 | DNA polymerase III subunit delta. | DNA polymerase III subunit tau. | 0.987 |
OIQ49332.1 | thrC_1 | BerOc1_01257 | BerOc1_00441 | DNA polymerase III subunit delta. | Threonine synthase. | 0.790 |
ask | dmdB | BerOc1_03605 | BerOc1_00251 | Aspartokinase. | 2,3-dimethylmalate dehydratase small subunit. | 0.474 |
ask | dpaL | BerOc1_03605 | BerOc1_02836 | Aspartokinase. | Diaminopropionate ammonia-lyase. | 0.829 |
ask | hom | BerOc1_03605 | BerOc1_00096 | Aspartokinase. | Homoserine dehydrogenase. | 0.977 |
ask | ilvE_2 | BerOc1_03605 | BerOc1_00242 | Aspartokinase. | Branched-chain-amino-acid aminotransferase. | 0.666 |
ask | serA | BerOc1_03605 | BerOc1_00665 | Aspartokinase. | D-3-phosphoglycerate dehydrogenase. | 0.489 |
ask | thrB | BerOc1_03605 | BerOc1_01393 | Aspartokinase. | Homoserine kinase. | 0.669 |
ask | thrC_1 | BerOc1_03605 | BerOc1_00441 | Aspartokinase. | Threonine synthase. | 0.750 |
dmdB | ask | BerOc1_00251 | BerOc1_03605 | 2,3-dimethylmalate dehydratase small subunit. | Aspartokinase. | 0.474 |
dmdB | dpaL | BerOc1_00251 | BerOc1_02836 | 2,3-dimethylmalate dehydratase small subunit. | Diaminopropionate ammonia-lyase. | 0.588 |
dmdB | hom | BerOc1_00251 | BerOc1_00096 | 2,3-dimethylmalate dehydratase small subunit. | Homoserine dehydrogenase. | 0.542 |
dmdB | ilvC_1 | BerOc1_00251 | BerOc1_02550 | 2,3-dimethylmalate dehydratase small subunit. | Ketol-acid reductoisomerase. | 0.928 |
dmdB | serA | BerOc1_00251 | BerOc1_00665 | 2,3-dimethylmalate dehydratase small subunit. | D-3-phosphoglycerate dehydrogenase. | 0.700 |
dmdB | thrC_1 | BerOc1_00251 | BerOc1_00441 | 2,3-dimethylmalate dehydratase small subunit. | Threonine synthase. | 0.718 |
dnaX_1 | OIQ49332.1 | BerOc1_00093 | BerOc1_01257 | DNA polymerase III subunit tau. | DNA polymerase III subunit delta. | 0.987 |
dnaX_1 | thrC_1 | BerOc1_00093 | BerOc1_00441 | DNA polymerase III subunit tau. | Threonine synthase. | 0.812 |
dpaL | ask | BerOc1_02836 | BerOc1_03605 | Diaminopropionate ammonia-lyase. | Aspartokinase. | 0.829 |
dpaL | dmdB | BerOc1_02836 | BerOc1_00251 | Diaminopropionate ammonia-lyase. | 2,3-dimethylmalate dehydratase small subunit. | 0.588 |
dpaL | hom | BerOc1_02836 | BerOc1_00096 | Diaminopropionate ammonia-lyase. | Homoserine dehydrogenase. | 0.862 |
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