STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbU_1Phosphoserine phosphatase RsbU. (704 aa)    
Predicted Functional Partners:
btrV
Putative anti-sigma factor antagonist BtrV.
 
 0.960
OIQ48782.1
Hybrid sensory histidine kinase BarA.
 
 
 0.924
OIQ49591.1
Hpt domain protein.
 
 
 0.920
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.918
rpfC_3
Sensory/regulatory protein RpfC.
 
 
 0.915
luxQ_8
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.914
luxQ_4
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.904
barA_4
Signal transduction histidine-protein kinase BarA.
  
 
 0.904
arcB_3
Aerobic respiration control sensor protein ArcB.
 
 
 0.902
rpfC_1
Sensory/regulatory protein RpfC.
  
 
 0.901
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.