Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argB | argC | BerOc1_01018 | BerOc1_00703 | Acetylglutamate kinase. | N-acetyl-gamma-glutamyl-phosphate reductase. | 0.999 |
argB | argD | BerOc1_01018 | BerOc1_00012 | Acetylglutamate kinase. | Acetylornithine aminotransferase. | 0.976 |
argB | argF | BerOc1_01018 | BerOc1_00410 | Acetylglutamate kinase. | Ornithine carbamoyltransferase. | 0.981 |
argB | argG | BerOc1_01018 | BerOc1_00409 | Acetylglutamate kinase. | Argininosuccinate synthase. | 0.934 |
argB | argH1 | BerOc1_01018 | BerOc1_00408 | Acetylglutamate kinase. | Argininosuccinate lyase 1. | 0.974 |
argB | argJ | BerOc1_01018 | BerOc1_01454 | Acetylglutamate kinase. | Arginine biosynthesis bifunctional protein ArgJ. | 0.997 |
argB | carB_1 | BerOc1_01018 | BerOc1_00467 | Acetylglutamate kinase. | Carbamoyl-phosphate synthase large chain. | 0.909 |
argB | glnB_1 | BerOc1_01018 | BerOc1_00786 | Acetylglutamate kinase. | Nitrogen regulatory protein P-II. | 0.850 |
argB | patA_1 | BerOc1_01018 | BerOc1_00584 | Acetylglutamate kinase. | Putrescine aminotransferase. | 0.937 |
argB | rocD | BerOc1_01018 | BerOc1_02039 | Acetylglutamate kinase. | Ornithine aminotransferase. | 0.944 |
argC | argB | BerOc1_00703 | BerOc1_01018 | N-acetyl-gamma-glutamyl-phosphate reductase. | Acetylglutamate kinase. | 0.999 |
argC | argD | BerOc1_00703 | BerOc1_00012 | N-acetyl-gamma-glutamyl-phosphate reductase. | Acetylornithine aminotransferase. | 0.988 |
argC | argF | BerOc1_00703 | BerOc1_00410 | N-acetyl-gamma-glutamyl-phosphate reductase. | Ornithine carbamoyltransferase. | 0.963 |
argC | argG | BerOc1_00703 | BerOc1_00409 | N-acetyl-gamma-glutamyl-phosphate reductase. | Argininosuccinate synthase. | 0.938 |
argC | argH1 | BerOc1_00703 | BerOc1_00408 | N-acetyl-gamma-glutamyl-phosphate reductase. | Argininosuccinate lyase 1. | 0.935 |
argC | argJ | BerOc1_00703 | BerOc1_01454 | N-acetyl-gamma-glutamyl-phosphate reductase. | Arginine biosynthesis bifunctional protein ArgJ. | 0.991 |
argC | carB_1 | BerOc1_00703 | BerOc1_00467 | N-acetyl-gamma-glutamyl-phosphate reductase. | Carbamoyl-phosphate synthase large chain. | 0.766 |
argC | patA_1 | BerOc1_00703 | BerOc1_00584 | N-acetyl-gamma-glutamyl-phosphate reductase. | Putrescine aminotransferase. | 0.941 |
argC | rocD | BerOc1_00703 | BerOc1_02039 | N-acetyl-gamma-glutamyl-phosphate reductase. | Ornithine aminotransferase. | 0.942 |
argD | argB | BerOc1_00012 | BerOc1_01018 | Acetylornithine aminotransferase. | Acetylglutamate kinase. | 0.976 |
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