STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzcTyrosine-protein kinase wzc. (501 aa)    
Predicted Functional Partners:
OIQ49153.1
Polysaccharide biosynthesis/export protein.
 
 0.999
wecA
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
 
 
 0.991
ywqD
Tyrosine-protein kinase YwqD.
 
 0.980
ycf3_2
Photosystem I assembly protein Ycf3.
 
     0.932
OIQ49150.1
Hypothetical protein.
 
     0.929
algA_1
Alginate biosynthesis protein AlgA.
 
 
 0.904
algA_2
Alginate biosynthesis protein AlgA.
 
 
 0.879
gchK
Globin-coupled histidine kinase.
 
  
 0.830
OIQ49149.1
Hypothetical protein.
    
 0.829
OIQ49144.1
Exosortase_EpsH.
 
     0.828
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.