Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OIQ48937.1 | rd | BerOc1_03693 | BerOc1_01342 | Desulfoferrodoxin. | Rubredoxin. | 0.619 |
OIQ48937.1 | rd2 | BerOc1_03693 | BerOc1_01343 | Desulfoferrodoxin. | Rubredoxin-2. | 0.619 |
OIQ48937.1 | roo | BerOc1_03693 | BerOc1_01341 | Desulfoferrodoxin. | Rubredoxin-oxygen oxidoreductase. | 0.645 |
OIQ50685.1 | nifU_2 | BerOc1_02626 | BerOc1_03648 | Blue-light-activated protein. | NifU-like protein. | 0.558 |
OIQ50685.1 | roo | BerOc1_02626 | BerOc1_01341 | Blue-light-activated protein. | Rubredoxin-oxygen oxidoreductase. | 0.564 |
dfx | rbr | BerOc1_01344 | BerOc1_01345 | Desulfoferrodoxin. | Rubrerythrin. | 0.877 |
dfx | rd | BerOc1_01344 | BerOc1_01342 | Desulfoferrodoxin. | Rubredoxin. | 0.783 |
dfx | rd2 | BerOc1_01344 | BerOc1_01343 | Desulfoferrodoxin. | Rubredoxin-2. | 0.824 |
dfx | roo | BerOc1_01344 | BerOc1_01341 | Desulfoferrodoxin. | Rubredoxin-oxygen oxidoreductase. | 0.818 |
hcp | nasB | BerOc1_01718 | BerOc1_00082 | Hydroxylamine reductase. | Assimilatory nitrate reductase electron transfer subunit. | 0.773 |
hcp | nasD_1 | BerOc1_01718 | BerOc1_00006 | Hydroxylamine reductase. | Nitrite reductase [NAD(P)H]. | 0.773 |
hcp | nifU_2 | BerOc1_01718 | BerOc1_03648 | Hydroxylamine reductase. | NifU-like protein. | 0.701 |
hcp | rbr | BerOc1_01718 | BerOc1_01345 | Hydroxylamine reductase. | Rubrerythrin. | 0.453 |
hcp | roo | BerOc1_01718 | BerOc1_01341 | Hydroxylamine reductase. | Rubredoxin-oxygen oxidoreductase. | 0.698 |
nasB | hcp | BerOc1_00082 | BerOc1_01718 | Assimilatory nitrate reductase electron transfer subunit. | Hydroxylamine reductase. | 0.773 |
nasB | nifU_2 | BerOc1_00082 | BerOc1_03648 | Assimilatory nitrate reductase electron transfer subunit. | NifU-like protein. | 0.429 |
nasB | rd | BerOc1_00082 | BerOc1_01342 | Assimilatory nitrate reductase electron transfer subunit. | Rubredoxin. | 0.911 |
nasB | rd2 | BerOc1_00082 | BerOc1_01343 | Assimilatory nitrate reductase electron transfer subunit. | Rubredoxin-2. | 0.911 |
nasB | roo | BerOc1_00082 | BerOc1_01341 | Assimilatory nitrate reductase electron transfer subunit. | Rubredoxin-oxygen oxidoreductase. | 0.646 |
nasD_1 | hcp | BerOc1_00006 | BerOc1_01718 | Nitrite reductase [NAD(P)H]. | Hydroxylamine reductase. | 0.773 |
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