STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplS50S ribosomal protein L19. (116 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16.
 
 
 0.997
rplA
50S ribosomal protein L1.
 
 
 0.994
rplU
50S ribosomal protein L21.
 
 
 0.992
trmD
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.992
rplK
50S ribosomal protein L11.
 
 
 0.992
rpsG
30S ribosomal protein S7.
 
 
 0.992
rplE
50S ribosomal protein L5.
  
 
 0.992
rplT
50S ribosomal protein L20.
 
 
 0.991
rpmA
50S ribosomal protein L27.
 
 
 0.991
rplL
50S ribosomal protein L7/L12.
 
 
 0.991
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.