Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OIQ49556.1 | ypeA | BerOc1_01481 | BerOc1_01480 | Hypothetical protein. | Acetyltransferase YpeA. | 0.550 |
OIQ50364.1 | argB | BerOc1_02295 | BerOc1_01018 | Aspartate aminotransferase. | Acetylglutamate kinase. | 0.519 |
OIQ50364.1 | argJ | BerOc1_02295 | BerOc1_01454 | Aspartate aminotransferase. | Arginine biosynthesis bifunctional protein ArgJ. | 0.565 |
OIQ50364.1 | aspC_2 | BerOc1_02295 | BerOc1_01312 | Aspartate aminotransferase. | Aspartate aminotransferase. | 0.597 |
OIQ50364.1 | dapC | BerOc1_02295 | BerOc1_01391 | Aspartate aminotransferase. | Putative N-succinyldiaminopimelate aminotransferase DapC. | 0.620 |
OIQ50364.1 | pheA | BerOc1_02295 | BerOc1_02916 | Aspartate aminotransferase. | P-protein. | 0.949 |
OIQ50364.1 | ypeA | BerOc1_02295 | BerOc1_01480 | Aspartate aminotransferase. | Acetyltransferase YpeA. | 0.466 |
argA | argB | BerOc1_02100 | BerOc1_01018 | Amino-acid acetyltransferase. | Acetylglutamate kinase. | 0.779 |
argA | argJ | BerOc1_02100 | BerOc1_01454 | Amino-acid acetyltransferase. | Arginine biosynthesis bifunctional protein ArgJ. | 0.789 |
argA | aspC_2 | BerOc1_02100 | BerOc1_01312 | Amino-acid acetyltransferase. | Aspartate aminotransferase. | 0.676 |
argA | ypeA | BerOc1_02100 | BerOc1_01480 | Amino-acid acetyltransferase. | Acetyltransferase YpeA. | 0.484 |
argB | OIQ50364.1 | BerOc1_01018 | BerOc1_02295 | Acetylglutamate kinase. | Aspartate aminotransferase. | 0.519 |
argB | argA | BerOc1_01018 | BerOc1_02100 | Acetylglutamate kinase. | Amino-acid acetyltransferase. | 0.779 |
argB | argJ | BerOc1_01018 | BerOc1_01454 | Acetylglutamate kinase. | Arginine biosynthesis bifunctional protein ArgJ. | 0.997 |
argB | aspC_1 | BerOc1_01018 | BerOc1_00686 | Acetylglutamate kinase. | Aspartate aminotransferase. | 0.519 |
argB | aspC_2 | BerOc1_01018 | BerOc1_01312 | Acetylglutamate kinase. | Aspartate aminotransferase. | 0.519 |
argB | dapC | BerOc1_01018 | BerOc1_01391 | Acetylglutamate kinase. | Putative N-succinyldiaminopimelate aminotransferase DapC. | 0.519 |
argB | pheA | BerOc1_01018 | BerOc1_02916 | Acetylglutamate kinase. | P-protein. | 0.499 |
argB | puuR_2 | BerOc1_01018 | BerOc1_02844 | Acetylglutamate kinase. | HTH-type transcriptional regulator PuuR. | 0.468 |
argB | ypeA | BerOc1_01018 | BerOc1_01480 | Acetylglutamate kinase. | Acetyltransferase YpeA. | 0.673 |
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