STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ49640.1EamA-like transporter family protein. (284 aa)    
Predicted Functional Partners:
uppS
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific).
  
 
 0.780
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
  
 
  0.779
nikQ
Nickel transport protein NikQ.
  
 
  0.779
mlaE_2
Putative phospholipid ABC transporter permease protein MlaE.
    
  0.739
OIQ50341.1
Bacterial extracellular solute-binding protein, family 3.
  
  
  0.602
rpsC
30S ribosomal protein S3.
   
 
  0.600
rpsO
30S ribosomal protein S15.
    
  0.600
grpE
Protein GrpE.
    
  0.595
OIQ50342.1
Bacterial extracellular solute-binding protein, family 3.
  
  
  0.559
OIQ52139.1
Electron transfer flavoprotein domain protein.
  
     0.553
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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