STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ49947.1Sulfite exporter TauE/SafE. (253 aa)    
Predicted Functional Partners:
yadH
Inner membrane transport permease YadH.
       0.779
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
       0.776
sigE
ECF RNA polymerase sigma factor SigE.
       0.773
rsiW
Anti-sigma-W factor RsiW.
       0.581
OIQ49952.1
Hypothetical protein.
       0.576
ytrE
ABC transporter ATP-binding protein YtrE.
       0.470
macB_5
Macrolide export ATP-binding/permease protein MacB.
       0.470
sdpR
Transcriptional repressor SdpR.
       0.456
OIQ49955.1
Hypothetical protein.
       0.439
OIQ49956.1
Hypothetical protein.
       0.439
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.