STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaF_1ADP-heptose--LPS heptosyltransferase 2. (274 aa)    
Predicted Functional Partners:
rfaQ_1
Lipopolysaccharide core heptosyltransferase RfaQ.
 
 
 0.943
nuoC
NADH-quinone oxidoreductase subunit C/D.
    
 
 0.929
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
    
 0.878
ydaD
General stress protein 39.
    
 0.878
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
    
 0.878
fabG_3
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
    
 0.878
fabG_4
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
    
 0.878
tsaC1
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
    
 0.878
csgA
C-factor.
    
 0.878
hldE_1
Bifunctional protein HldE.
 
 
 0.842
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.