STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coaXType III pantothenate kinase. (256 aa)    
Predicted Functional Partners:
panC
Pantothenate synthetase.
  
 
 0.972
coaD
Phosphopantetheine adenylyltransferase.
 
  
 0.900
coaBC
Coenzyme A biosynthesis bifunctional protein CoaBC.
    
 0.853
panD
Aspartate 1-decarboxylase precursor.
  
  
 0.836
mazG
Nucleoside triphosphate pyrophosphohydrolase.
   
 
  0.797
cmk_1
Cytidylate kinase.
 
  
 0.718
tmk
Thymidylate kinase.
   
   0.687
eno
Enolase.
     
 0.652
OIQ50096.1
Hypothetical protein.
       0.648
birA_2
Bifunctional ligase/repressor BirA.
  
    0.588
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.