STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaBifunctional transcriptional activator/DNA repair enzyme Ada. (373 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD.
  
 
 0.867
rpoH
RNA polymerase sigma factor RpoH.
  
 
 0.867
yokF
SPBc2 prophage-derived endonuclease YokF precursor.
  
  
 0.686
polA
DNA polymerase I.
   
 
 0.627
OIQ52007.1
ComEC family competence protein.
     
 0.626
dinB_1
DNA polymerase IV.
 
  
 0.608
dnaA_1
Chromosomal replication initiator protein DnaA.
    
 
 0.587
OIQ50370.1
LysM domain/BON superfamily protein.
       0.587
dnaA_2
Chromosomal replication initiator protein DnaA.
    
 
 0.587
ogt_2
Methylated-DNA--protein-cysteine methyltransferase.
 
  
0.579
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.