STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepM_2Murein DD-endopeptidase MepM. (349 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease 7 large subunit.
       0.794
mepM_3
Murein DD-endopeptidase MepM.
 
    
0.743
sipT
Signal peptidase I T.
 
  
 0.678
mrcA
Penicillin-binding protein 1A.
 
   
 0.667
fliM
Flagellar motor switch protein FliM.
    
 
 0.621
sipP
Signal peptidase I P.
 
  
 0.526
xseB
Exodeoxyribonuclease 7 small subunit.
       0.505
OIQ50749.1
Farnesyl diphosphate synthase.
       0.505
mltD_2
Membrane-bound lytic murein transglycosylase D precursor.
  
 
 0.485
dxs
1-deoxy-D-xylulose-5-phosphate synthase.
       0.474
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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