STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease 7 small subunit. (84 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease 7 large subunit.
 
 0.996
OIQ49390.1
Hypothetical protein.
  
 0.990
OIQ51140.1
Hypothetical protein.
  
 0.990
OIQ50749.1
Farnesyl diphosphate synthase.
  
  
 0.921
dxs
1-deoxy-D-xylulose-5-phosphate synthase.
     
 0.794
fliA
RNA polymerase sigma factor FliA.
    
   0.779
hemC
Porphobilinogen deaminase.
   
    0.725
ispB
Octaprenyl-diphosphate synthase.
  
  
 0.655
OIQ51549.1
Preprotein translocase subunit YajC.
  
  
 0.599
rluD
Ribosomal large subunit pseudouridine synthase D.
  
  
 0.564
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.