STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppsA_4Phosphoenolpyruvate synthase. (856 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.826
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.826
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.826
ppsA_3
Phosphoenolpyruvate synthase.
 
  
 
0.807
pyk
Pyruvate kinase.
     
 0.774
ptsI_2
Phosphoenolpyruvate-protein phosphotransferase.
 
 
 0.762
OIQ52195.1
Putative FAD-linked oxidoreductase.
 
  
 0.746
OIQ51487.1
Hypothetical protein.
 
     0.733
OIQ51486.1
Sulfite exporter TauE/SafE.
 
     0.710
OIQ50622.1
Putative FAD-linked oxidoreductase.
    
 0.705
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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