STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ50829.1Glycosyl hydrolase family 57. (400 aa)    
Predicted Functional Partners:
malP
Maltodextrin phosphorylase.
 
 
 0.985
OIQ50831.1
Amylo-alpha-1,6-glucosidase.
 
 
 0.974
OIQ50830.1
Glycogen synthase.
 
 
  0.963
ctpB
Carboxy-terminal processing protease CtpB precursor.
    
  0.751
hddC
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
    
 0.701
rnd
Ribonuclease D.
  
     0.694
OIQ49078.1
Hypothetical protein.
    
 0.682
OIQ49215.1
Putative glycosyl hydrolase.
    
  0.655
algC
Phosphomannomutase/phosphoglucomutase.
    
  0.648
glmM
Phosphoglucosamine mutase.
    
  0.545
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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