STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsRibose-phosphate pyrophosphokinase. (312 aa)    
Predicted Functional Partners:
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta.
  
 0.988
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.982
rplY
50S ribosomal protein L25.
  
  
 0.942
glmU
Bifunctional protein GlmU.
 
  
 0.933
OIQ50572.1
NADH oxidase.
  
 0.926
OIQ51329.1
Dihydrolipoyl dehydrogenase.
  
 0.919
merA
Mercuric reductase.
  
 0.914
lysS
Lysine--tRNA ligase.
  
 
 0.909
pdhD
Dihydrolipoyl dehydrogenase.
   
 0.903
pgi
Glucose-6-phosphate isomerase.
 
 
 0.885
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.