STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ51109.1Hypothetical protein. (48 aa)    
Predicted Functional Partners:
OIQ51110.1
Lipoprotein NlpI.
       0.773
ccmF
Cytochrome c-type biogenesis protein CcmF.
       0.678
fbpC2
Fe(3+) ions import ATP-binding protein FbpC 2.
       0.678
OIQ51107.1
CcmB protein.
       0.678
ccmC
Heme exporter protein C.
       0.678
braC_3
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
       0.453
ccmE
Cytochrome c-type biogenesis protein CcmE.
       0.439
corC_2
Magnesium and cobalt efflux protein CorC.
       0.408
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.