STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadR_4Fatty acid metabolism regulator protein. (193 aa)    
Predicted Functional Partners:
mprA_5
Response regulator MprA.
 
     0.900
kinE_4
Sporulation kinase E.
 
 
   0.871
OIQ51275.1
Hypothetical protein.
 
     0.857
OIQ51271.1
Putative sulfate transporter.
 
     0.817
rssB
Regulator of RpoS.
 
     0.724
spo0A
Stage 0 sporulation protein A.
 
     0.720
lpxD_2
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase.
  
 
   0.634
dctD_2
C4-dicarboxylate transport transcriptional regulatory protein DctD.
 
     0.608
kinE_5
Sporulation kinase E.
 
 
   0.578
virA
Wide host range VirA protein.
 
 
   0.553
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.