STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppnK_3Putative inorganic polyphosphate/ATP-NAD kinase. (287 aa)    
Predicted Functional Partners:
nadE_2
Glutamine-dependent NAD(+) synthetase.
 
  
 0.838
OIQ51376.1
Hypothetical protein.
       0.792
rnr_1
Ribonuclease R.
   
 
  0.778
rnr_2
Ribonuclease R.
   
 
  0.778
OIQ51378.1
Hypothetical protein.
       0.722
mltA_2
Membrane-bound lytic murein transglycosylase A precursor.
       0.717
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
       0.709
polA
DNA polymerase I.
    
  0.592
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
  
  
 0.590
nadD
Nicotinate-nucleotide adenylyltransferase.
  
 
 0.587
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.