STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybB_3Putative Ni/Fe-hydrogenase 2 b-type cytochrome subunit. (408 aa)    
Predicted Functional Partners:
ttrB_5
Tetrathionate reductase subunit B precursor.
 
 0.992
OIQ51430.1
Class III cytochrome C family protein.
 
 
 0.991
fdnG
Formate dehydrogenase, nitrate-inducible, major subunit precursor.
 
 0.989
OIQ52232.1
Hypothetical protein.
 
 0.965
fdnH_1
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit.
 
 0.955
fdhB_4
Formate dehydrogenase subunit beta.
 
 0.953
fdhB_1
Formate dehydrogenase subunit beta.
 0.952
fdnH_2
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit.
 0.950
ttrB_2
Tetrathionate reductase subunit B precursor.
 
 0.950
fdhB_2
Formate dehydrogenase subunit beta.
 0.949
Your Current Organism:
Desulfovibrio dechloracetivorans
NCBI taxonomy Id: 117209
Other names: ATCC 700912, D. dechloracetivorans, Desulfovibrio dechloracetivorans Sun et al. 2001, Desulfovibrio sp. BerOc1, strain BerOc1, strain SF3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.