STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSM97764.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)    
Predicted Functional Partners:
OSM99449.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.823
OSM97770.1
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.687
OSM97765.1
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
OSM97769.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.613
OSM97766.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.578
OSM97767.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
OSM97768.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
OSM97763.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.477
OSM99040.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.470
OSM96826.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.450
Your Current Organism:
Lonsdalea populi
NCBI taxonomy Id: 1172565
Other names: CFCC 13125, DSM 25466, L. populi, LMG 27349, LMG:27349, Lonsdalea populi (Toth et al. 2013) Li et al. 2017, Lonsdalea quercina subsp. populi, Lonsdalea quercina subsp. populi Toth et al. 2013, Lonsdalea sp. NY011, Lonsdalea sp. NY041, Lonsdalea sp. NY060, NCAIM B 02483, strain NY060
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