STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WQO_29405Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)    
Predicted Functional Partners:
WQO_26670
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.749
WQO_29410
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.699
WQO_29450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.507
WQO_25475
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.466
WQO_31920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.408
WQO_29415
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.406
WQO_32685
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.405
Your Current Organism:
Streptomyces globisporus
NCBI taxonomy Id: 1172567
Other names: S. globisporus C-1027, Streptomyces globisporus C-1027
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