STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY91425.1Hypothetical protein; PFAM: Saccharopine dehydrogenase. (406 aa)    
Predicted Functional Partners:
AFY94077.1
PFAM: Cytochrome P450.
  
   
 0.516
AFY94075.1
PFAM: Cytochrome P450.
  
   
 0.509
AFY94176.1
Sterol desaturase; PFAM: Fatty acid hydroxylase superfamily.
  
     0.472
AFY93206.1
PFAM: Cytochrome P450.
  
   
 0.462
AFY94507.1
Lignostilbene-alpha,beta-dioxygenase-like enzyme; PFAM: Retinal pigment epithelial membrane protein.
  
     0.452
AFY95086.1
Integrase; PFAM: Phage integrase family.
  
     0.446
AFY93517.1
PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term.
  
     0.427
AFY91424.1
Hypothetical protein.
       0.412
AFY93855.1
PFAM: Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.412
AFY94034.1
PFAM: Bacteriorhodopsin-like protein.
  
     0.408
Your Current Organism:
Chamaesiphon minutus
NCBI taxonomy Id: 1173020
Other names: C. minutus PCC 6605, Chamaesiphon minutus PCC 6605, Chamaesiphon sp. ACMM 446, Chamaesiphon sp. ATCC 27169, Chamaesiphon sp. PCC 6605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.