STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY91865.1TIGR00299 family protein; PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein; Belongs to the LarC family. (515 aa)    
Predicted Functional Partners:
AFY94580.1
PFAM: NAD synthase; TIGRFAM: TIGR00268 family protein.
  
 0.980
AFY91933.1
NCAIR mutase-like protein; PFAM: AIR carboxylase.
  
 0.919
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.628
AFY93888.1
PFAM: Aldo/keto reductase family.
 
    0.566
AFY91864.1
PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
     
 0.534
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
    0.465
AFY91866.1
Hypothetical protein.
       0.418
AFY93473.1
PFAM: Aldo/keto reductase family.
 
    0.417
Your Current Organism:
Chamaesiphon minutus
NCBI taxonomy Id: 1173020
Other names: C. minutus PCC 6605, Chamaesiphon minutus PCC 6605, Chamaesiphon sp. ACMM 446, Chamaesiphon sp. ATCC 27169, Chamaesiphon sp. PCC 6605
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