STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY92642.1Transposase family protein; PFAM: Transposase DDE domain. (457 aa)    
Predicted Functional Partners:
AFY92869.1
Hypothetical protein.
  
     0.624
AFY93184.1
Hypothetical protein.
  
     0.608
AFY92546.1
Hypothetical protein.
  
     0.587
AFY92886.1
PFAM: Protein of unknown function (DUF3696).
  
     0.546
AFY95707.1
PFAM: Thioredoxin.
  
     0.545
AFY95066.1
Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain.
  
     0.483
AFY95070.1
PFAM: Cyclic nucleotide-binding domain; TIGRFAM: bacteriocin-type transport-associated protein.
  
     0.479
AFY94401.1
Hypothetical protein.
  
     0.449
AFY94423.1
PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal.
  
     0.448
AFY93362.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
  
     0.441
Your Current Organism:
Chamaesiphon minutus
NCBI taxonomy Id: 1173020
Other names: C. minutus PCC 6605, Chamaesiphon minutus PCC 6605, Chamaesiphon sp. ACMM 446, Chamaesiphon sp. ATCC 27169, Chamaesiphon sp. PCC 6605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.