STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY94420.1Hypothetical protein. (319 aa)    
Predicted Functional Partners:
AFY94421.1
Hypothetical protein.
 
   
 0.952
AFY94423.1
PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal.
 
   
 0.928
AFY94422.1
Integrase family protein; PFAM: Integrase core domain; AT hook motif.
 
     0.918
AFY92869.1
Hypothetical protein.
  
     0.523
AFY92208.1
Hypothetical protein.
  
     0.516
AFY94419.1
PFAM: Cas6 Crispr; TIGRFAM: CRISPR-associated protein Cas6, subtype MYXAN.
       0.513
AFY93184.1
Hypothetical protein.
  
     0.505
AFY95147.1
PFAM: Mu transposase, C-terminal; Integrase core domain.
 
     0.500
AFY93319.1
Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.497
AFY92546.1
Hypothetical protein.
  
     0.480
Your Current Organism:
Chamaesiphon minutus
NCBI taxonomy Id: 1173020
Other names: C. minutus PCC 6605, Chamaesiphon minutus PCC 6605, Chamaesiphon sp. ACMM 446, Chamaesiphon sp. ATCC 27169, Chamaesiphon sp. PCC 6605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.