STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ12331.1PFAM: PemK-like protein; KEGG: cyj:Cyan7822_0473 transcriptional modulator of MazE/toxin, MazF; SPTR: Transcriptional modulator of MazE/toxin, MazF. (118 aa)    
Predicted Functional Partners:
AFZ12330.1
KEGG: cyj:Cyan7822_0472 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFZ13477.1
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT / AbrB like domain; COGs: COG2336 Growth regulator; InterPro IPR007159; KEGG: cyp:PCC8801_1200 transcriptional regulator/antitoxin, MazE; PFAM: Transcription regulator AbrB/SpoV, predicted; SMART: Transcription regulator AbrB/SpoV, predicted; SPTR: Transcriptional regulator/antitoxin, MazE.
  
 
 0.726
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
     
 0.655
AFZ13269.1
KEGG: cyt:cce_4924 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.596
psbB
Photosystem II chlorophyll-binding protein CP47; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
    
   0.443
Your Current Organism:
Crinalium epipsammum
NCBI taxonomy Id: 1173022
Other names: C. epipsammum PCC 9333, Crinalium epipsammum PCC 9333, Crinalium sp. PCC 9333
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