STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ12689.1PFAM: Protein of unknown function (DUF901); COGs: COG3688 RNA-binding protein containing a PIN domain; InterPro IPR010298; KEGG: npu:Npun_R4550 hypothetical protein; PFAM: Protein of unknown function DUF901; SPTR: Putative uncharacterized protein. (182 aa)    
Predicted Functional Partners:
mrnC
Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
 
  
 0.899
cysS
PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273; KEGG: npu:Npun_F3946 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.767
AFZ12708.1
PFAM: S4 domain; TIGRFAM: photosystem II S4 domain protein; COGs: COG2302 conserved hypothetical protein contains S4-like domain; InterPro IPR002942:IPR017506; KEGG: ana:alr2890 hypothetical protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: Alr2890 protein; TIGRFAM: Photosystem II S4.
  
    0.736
AFZ13974.1
RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: npu:Npun_R1190 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase T [...]
  
  
 0.603
AFZ14390.1
tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: ava:Ava_1436 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; SPTR: tRNA/rRNA methyltransferase (SpoU); Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.603
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
     0.585
AFZ12690.1
Polyamine-transporting ATPase; PFAM: ABC transporter; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: ava:Ava_2514 ABC transporter-like; PFAM: ABC transporter-like; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related.
       0.541
AFZ12691.1
HAMAP: Uncharacterised protein family UPF0367; InterPro IPR020885; KEGG: ter:Tery_1229 hypothetical protein; SPTR: UPF0367 protein MC7420_5297; Belongs to the UPF0367 family.
       0.537
AFZ13333.1
PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372:IPR005790; KEGG: cyh:Cyan8802_4220 DNA polymerase III subunit delta; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
  
     0.456
AFZ12581.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR002716:IPR006596; KEGG: cyj:Cyan7822_3622 PilT protein domain-containing protein; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc; SPTR: PIN domain protein.
 
     0.436
Your Current Organism:
Crinalium epipsammum
NCBI taxonomy Id: 1173022
Other names: C. epipsammum PCC 9333, Crinalium epipsammum PCC 9333, Crinalium sp. PCC 9333
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