STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ13828.1Pseudouridine synthase Rsu; PFAM: RNA pseudouridylate synthase; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR006145:IPR000748; KEGG: ter:Tery_2403 pseudouridine synthase, Rsu; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; Belongs to the pseudouridine synthase RsuA family. (203 aa)    
Predicted Functional Partners:
panC/cmk
Pantothenate synthetase, cytidylate kinase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the N-terminal section; belongs to the pantothenate synthetase family.
 
  
 0.780
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.770
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
       0.759
AFZ13967.1
Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: ana:all5306 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III; TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth.
  
    0.621
AFZ14388.1
KEGG: cyn:Cyan7425_4623 endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase.
  
    0.621
AFZ14281.1
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.607
AFZ13829.1
PFAM: Protein phosphatase 2C; COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045:IPR010822; KEGG: npu:Npun_R0694 putative protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C, N-terminal; Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like; SPTR: Protein phosphatase 2C.
       0.531
AFZ13830.1
PFAM: Protein kinase domain; FHA domain; COGs: COG0515 Serine/threonine protein kinase; InterPro IPR000253:IPR002290:IPR020635:IPR017442; KEGG: npu:Npun_R0693 serine/threonine kinase protein; PFAM: Serine/threonine-protein kinase-like domain; Forkhead-associated (FHA) domain; SMART: Serine/threonine-protein kinase domain; Forkhead-associated (FHA) domain; Tyrosine-protein kinase, catalytic domain; SPTR: Protein kinase domain.
       0.512
pheT
phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR002547:IPR005146:IPR005147:IPR005121:IPR 004532; KEGG: npu:Npun_F1087 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SMART: B3/B4 tRNA-bindi [...]
     
 0.459
AFZ11211.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
     
 0.454
Your Current Organism:
Crinalium epipsammum
NCBI taxonomy Id: 1173022
Other names: C. epipsammum PCC 9333, Crinalium epipsammum PCC 9333, Crinalium sp. PCC 9333
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