STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY64920.1D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: ter:Tery_4167 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine ca [...] (482 aa)    
Predicted Functional Partners:
AFY65861.1
PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: cyn:Cyan7425_3331 peptidase S13 D-Ala-D-Ala carboxypeptidase C; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; SPTR: Putative uncharacterized protein.
  
  
 
0.929
AFY64919.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR001440:IPR019734:IPR013026; KEGG: ter:Tery_2349 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
       0.701
AFY65601.1
PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: npu:Npun_R2549 peptidase U61, LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Putative uncharacterized protein.
 
   
 0.571
AFY67492.1
PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; FHA domain; TIGRFAM: penicillin-binding protein, 1A family; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR000253:IPR001264:IPR001460:IPR011816; KEGG: npu:Npun_R0887 FHA modulated glycosyl transferase/transpeptidase; PFAM: glycosyl transferase family 51; Forkhead-associated protein; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SMART: Forkhead-associated protein; SPTR: Glycosyl transferase/Transpeptidase with FHA domain modulation; TIGRFAM: [...]
     
 0.562
AFY67250.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460; KEGG: ava:Ava_4620 penicillin-binding protein, transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding Protein dimerisation domain family; manually curated.
     
 0.538
AFY67327.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790; KEGG: cyn:Cyan7425_1372 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding Protein dimerisation domain family; TIGRFAM: penicillin-binding protein 2.
     
 0.538
AFY68149.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790; KEGG: ter:Tery_2090 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein; TIGRFAM: penicillin-binding protein 2.
     
 0.538
AFY64668.1
ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: syf:Synpcc7942_0647 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: Putative uncharacterized protein.
     
 0.536
AFY68186.1
Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460:IPR011816; KEGG: ter:Tery_0444 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family.
     
 0.527
Your Current Organism:
Geitlerinema sp. PCC7407
NCBI taxonomy Id: 1173025
Other names: G. sp. PCC 7407, Geitlerinema sp. ATCC 29126, Geitlerinema sp. CPCC 99, Geitlerinema sp. PCC 7407
Server load: low (30%) [HD]
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