STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ18416.1PFAM: RAMP superfamily. (582 aa)    
Predicted Functional Partners:
AFZ18415.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
  
 0.951
AFZ18417.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
 
  
 0.951
AFZ18421.1
CRISPR-associated protein; PFAM: RAMP superfamily.
 
     0.905
AFZ19908.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.763
AFZ21368.1
Hypothetical protein.
  
     0.708
AFZ18419.1
CRISPR-associated protein, TIGR03984 family.
       0.668
AFZ20252.1
PFAM: Domain of Unknown Function (DUF928).
  
     0.634
AFZ21357.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.629
AFZ18418.1
PFAM: Protein of unknown function (DUF820).
       0.625
AFZ18420.1
Hypothetical protein.
       0.625
Your Current Organism:
Microcoleus sp. PCC7113
NCBI taxonomy Id: 1173027
Other names: Allocoleopsis franciscanus PCC 7113, M. sp. PCC 7113, Microcoleus sp. PCC 7113, Oscillatoria sp. Mc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.