STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9X5Q8annotation not available (240 aa)    
Predicted Functional Partners:
A0A0J9X2G4
annotation not available
    
 0.985
A0A0J9XI37
Dsl1_C domain-containing protein.
    
 0.984
A0A0J9X2M3
Similar to Saccharomyces cerevisiae YLR268W SEC22 R-SNARE protein; Belongs to the synaptobrevin family.
    
 0.980
A0A0J9XAE2
annotation not available
    
 0.943
A0A0J9XB69
Belongs to the synaptobrevin family.
    
 
 0.894
A0A0J9XDM6
Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.887
A0A0J9XCG1
Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.
    
 0.874
A0A0J9X804
annotation not available
    
 
 0.870
A0A0J9XC05
annotation not available
    
 0.853
A0A0J9XC45
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
 
  0.809
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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