STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9X7T5Uncharacterized protein. (348 aa)    
Predicted Functional Partners:
A0A0J9XFJ4
Uncharacterized protein.
    
 0.758
A0A0J9XFY8
annotation not available
    
 0.739
A0A0J9X5X6
Nuclear cap-binding protein subunit 2.
    
 0.733
A0A0J9X4D3
Similar to Saccharomyces cerevisiae YIR009W MSL1 U2B component of U2 snRNP.
    
 0.725
A0A0J9XH86
Similar to Saccharomyces cerevisiae YBR119W MUD1 U1 snRNP A protein.
    
 0.725
A0A0J9X688
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.718
A0A0J9X2W2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.697
A0A0J9XA94
Similar to Saccharomyces cerevisiae YMR288W HSH155 U2-snRNP associated splicing factor.
    
 0.694
A0A0J9X8P8
annotation not available
   
 0.691
A0A0J9X605
Small nuclear ribonucleoprotein G.
    
 0.688
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.