STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9X9R8WD_REPEATS_REGION domain-containing protein. (345 aa)    
Predicted Functional Partners:
A0A0J9X652
Similar to Saccharomyces cerevisiae YBR055C PRP6 Splicing factor.
   
 0.999
A0A0J9XAK3
annotation not available
   
 0.999
A0A0J9XBM7
Similar to Saccharomyces cerevisiae YHR165C PRP8 Component of the U4/U6-U5 snRNP complex.
   
 0.999
A0A0J9XKE9
Similar to Saccharomyces cerevisiae YER172C BRR2 RNA-dependent ATPase RNA helicase (DEIH box).
   
 0.999
A0A0J9X8F2
Similar to Saccharomyces cerevisiae YDR243C PRP28 RNA helicase in the DEAD-box family; Belongs to the DEAD box helicase family.
    
 0.998
A0A0J9X4H2
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.997
A0A0J9X9T6
Similar to Saccharomyces cerevisiae YDR364C CDC40 Pre-mRNA splicing factor.
  
 
  
0.989
A0A0J9X3L2
Similar to Saccharomyces cerevisiae YLL036C PRP19 Splicing factor associated with the spliceosome.
   
 
 0.988
A0A0J9XDA3
Similar to Saccharomyces cerevisiae YMR213W CEF1 Essential splicing factor.
   
   0.988
A0A0J9XBE2
MFAP1 domain-containing protein.
   
   0.986
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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