STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XCV5Similar to saccharomyces cerevisiae YDL030W PRP9 Subunit of the SF3a splicing factor complex. (614 aa)    
Predicted Functional Partners:
A0A0J9X5U2
Similar to Saccharomyces cerevisiae YPL213W LEA1 Component of U2 snRNP.
   
 0.999
A0A0J9X9T8
annotation not available
   
 0.999
A0A0J9X8P5
annotation not available
    
 0.998
A0A0J9X5R5
annotation not available
    
 0.997
A0A0J9X9Y7
annotation not available
   
 0.997
A0A0J9XF38
Similar to Saccharomyces cerevisiae YML049C RSE1 Protein involved in pre-mRNA splicing.
   
 0.997
A0A0J9YHM7
annotation not available
   
 0.997
A0A0J9X2W2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.996
A0A0J9XJC4
annotation not available
   
 0.996
A0A0J9XDI1
Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B.
   
 0.995
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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