STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XDM2RNA helicase. (759 aa)    
Predicted Functional Partners:
A0A0J9X3R0
annotation not available
   
 0.997
A0A0J9XEB0
Similar to Saccharomyces cerevisiae YDR365C ESF1 Nucleolar protein involved in pre rRNA processing.
   
 
 0.997
A0A0J9X537
RNA helicase.
  
  
0.993
A0A0J9X9A0
annotation not available
   
 0.985
A0A0J9XBM9
annotation not available
   
 
 0.984
A0A0J9XJZ6
U3 small nucleolar RNA-associated protein 22.
   
 0.983
A0A0J9XCN1
Similar to Saccharomyces cerevisiae YOR287C RRP36 Component of 90S preribosomes.
   
 0.980
A0A0J9X3U9
annotation not available
   
 0.978
A0A0J9X4Q2
annotation not available
   
 0.977
A0A0J9XEN5
annotation not available
   
 
 0.977
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.