STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XET1Similar to Saccharomyces cerevisiae YPL212C PUS1 tRNA:pseudouridine synthase. (596 aa)    
Predicted Functional Partners:
A0A0J9XLA7
annotation not available
   
 0.848
A0A0J9X6U9
annotation not available
   
 0.837
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.813
A0A0J9X4E9
Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.795
A0A0J9XGF5
Tryptophan synthase.
     
 0.737
A0A0J9X3U2
Similar to Saccharomyces cerevisiae YPR110C RPC40 RNA polymerase subunit AC40.
  
  
 0.680
A0A0J9X5D4
Similar to Saccharomyces cerevisiae YIL021W RPB3 RNA polymerase II third largest subunit B44.
  
  
 0.680
A0A0J9X925
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.
  
 
 0.676
A0A0J9X7T3
annotation not available
     
 0.640
A0A0J9XAC0
annotation not available
  
  
 0.639
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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