STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XFR6Similar to Saccharomyces cerevisiae YHL036W MUP3 Low affinity methionine permease. (561 aa)    
Predicted Functional Partners:
A0A0J9XGL0
Fe2OG dioxygenase domain-containing protein.
    
 0.897
ARO1
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.697
A0A0J9X2S4
Similar to Saccharomyces cerevisiae YDR242W AMD2 Putative amidase.
 
  
  0.580
A0A0J9X2Q7
Similar to Saccharomyces cerevisiae YDR242W AMD2 Putative amidase.
 
  
  0.571
A0A0J9XGF5
Tryptophan synthase.
      
 0.519
A0A0J9XLB1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 0.498
A0A0J9X7T3
annotation not available
    
 
 0.497
A0A0J9X3K5
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
  0.483
A0A0J9X880
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
 0.424
A0A0J9XEY2
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
 0.424
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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