STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XH86Similar to Saccharomyces cerevisiae YBR119W MUD1 U1 snRNP A protein. (247 aa)    
Predicted Functional Partners:
A0A0J9X5U2
Similar to Saccharomyces cerevisiae YPL213W LEA1 Component of U2 snRNP.
   
 0.976
A0A0J9X2W2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.973
A0A0J9X688
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.972
A0A0J9XC57
Small nuclear ribonucleoprotein Sm D2.
   
 0.970
A0A0J9X605
Small nuclear ribonucleoprotein G.
   
 0.969
A0A0J9XHK0
annotation not available
   
 0.969
A0A0J9XBZ6
Similar to Saccharomyces cerevisiae YPR182W SMX3 Core Sm protein Sm F.
   
 0.967
A0A0J9XDI1
Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B.
   
 0.967
A0A0J9X524
Similar to Saccharomyces cerevisiae YPR094W RDS3 Component of the SF3b subcomplex of the U2 snRNP.
   
 0.964
A0A0J9XA94
Similar to Saccharomyces cerevisiae YMR288W HSH155 U2-snRNP associated splicing factor.
   
 0.962
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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