STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J9XI61Similar to Saccharomyces cerevisiae YKR079C TRZ1 tRNA 3'-end processing endonuclease tRNase Z. (885 aa)    
Predicted Functional Partners:
A0A0J9XFA4
Endonuclease.
   
   0.946
A0A0J9XB27
annotation not available
   
    0.767
A0A0J9X6H9
annotation not available
   
  
 0.746
A0A0J9X9R2
Similar to Saccharomyces cerevisiae YOR001W RRP6 Nuclear exosome exonuclease component.
  
 
 0.734
A0A0J9X9Z7
Similar to Saccharomyces cerevisiae YGR158C MTR3 Exosome non-catalytic core component.
  
 
 0.657
A0A0J9X8C7
Similar to Saccharomyces cerevisiae YGR095C RRP46 Exosome non-catalytic core component.
  
 
 0.655
A0A0J9XCA1
Similar to Saccharomyces cerevisiae YGR195W SKI6 Exosome non-catalytic core component.
  
 
 0.655
A0A0J9XIL7
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.652
A0A0J9X8X9
Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.612
A0A0J9XH32
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
  
  
 0.605
Your Current Organism:
Geotrichum candidum
NCBI taxonomy Id: 1173061
Other names: ATCC 22600 [[Endomyces geotrichum]], CBS 615.84 [[Galactomyces candidus]], CBS 772.71 [[Endomyces geotrichum]], Dipodascus geotrichum, Endomyces geotrichum, G. candidum, Galactomyces candidum, Galactomyces candidus, Galactomyces candidus de Hoog & M.T. Smith, 2004, Galactomyces geotrichum, Geotrichum sp. S9, JCM 6359 [[Endomyces geotrichum]], NRRL Y-17569 [[Endomyces geotrichum]], Oospora lactis
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