STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSUB01_06069Putative RNA recognition domain-containing protein. (479 aa)    
Predicted Functional Partners:
CSUB01_06637
Putative NOSIC domain-containing protein.
   
 
 0.993
CSUB01_03477
Putative fibrillarin.
   
 
 0.993
CSUB01_07157
Putative DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
   
 
 0.954
CSUB01_05321
Putative G-patch domain-containing protein.
   
 
 0.952
CSUB01_01227
Putative RNA recognition domain-containing protein.
   
   0.945
CSUB01_00137
Putative TruB family pseudouridylate synthase.
   
 
 0.928
CSUB01_01391
Putative histone-arginine methyltransferase CARM1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.923
CSUB01_02352
CP-type G domain-containing protein.
   
 
 0.918
CSUB01_02685
Putative NOSIC domain-containing protein.
   
 
 0.914
CSUB01_01669
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.909
Your Current Organism:
Colletotrichum sublineola
NCBI taxonomy Id: 1173701
Other names: C. sublineola, CBS 131301, Colletotrichum sublineolum, S3.001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.