STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESE87357.1Deubiquitinase SseL. (342 aa)    
Predicted Functional Partners:
ESE84789.1
Pathogenicity island 2 effector protein SseJ; COG3240 Phospholipase/lecithinase/hemolysin.
   
 
 0.898
sifA
Secreted effector protein SifA.
   
 
 0.858
ESE84127.1
Secreted effector protein PipB2; COG1357 Uncharacterized low-complexity proteins.
   
  
 0.839
ESE84920.1
Pathogenicity island 1 protein SopD2.
   
  
 0.821
ESE84709.1
Secreted effector kinase steC.
   
  
 0.811
ESE85224.1
Pathogenicity island 1 effector protein StpP; COG2453 Predicted protein-tyrosine phosphatase.
   
 
 0.809
ESE82957.1
Pathogenicity island 2 effector protein SseF.
      
 0.806
ESE82958.1
Pathogenicity island 2 effector protein SseG.
      
 0.803
ESE81231.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
      
 0.576
sifB
Secreted effector protein SifB.
   
  
 0.570
Your Current Organism:
Salmonella enterica indica
NCBI taxonomy Id: 1173950
Other names: S. enterica subsp. indica serovar 6,14,25:z10:1,(2),7 str. 1121, Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7 str. 1121
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.