STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ04800.1Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK. (106 aa)    
Predicted Functional Partners:
SDJ04184.1
LysM domain-containing protein.
  
  
 0.637
SDI98690.1
Hypothetical protein.
    
   0.589
SDJ20572.1
CAAX protease self-immunity.
    
   0.589
SDJ37904.1
Hypothetical protein.
    
   0.589
SDK09888.1
Membrane protease YdiL, CAAX protease family.
    
   0.589
SDK45368.1
Hypothetical protein.
    
   0.589
SDK73057.1
CAAX protease self-immunity.
    
   0.582
SDJ04733.1
Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK.
     
 0.567
SDJ05149.1
Cell wall-associated hydrolase, NlpC family.
  
 
 0.567
SDK88778.1
Cell wall-associated hydrolase, NlpC family.
  
 
 0.567
Your Current Organism:
Paenibacillus typhae
NCBI taxonomy Id: 1174501
Other names: CGMCC 1.11012, DSM 25190, P. typhae, Paenibacillus sp. enrichment culture clone xj7, Paenibacillus sp. xj7, Paenibacillus typhae Kong et al. 2013, strain xj7
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