STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ62618.1Signal transduction histidine kinase. (466 aa)    
Predicted Functional Partners:
SDJ62588.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.979
SDH98887.1
PAS domain S-box-containing protein.
 
0.943
SDJ27123.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.941
SDJ39355.1
PAS domain S-box-containing protein.
 
0.910
SDI97290.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.909
SDL03579.1
Signal transduction histidine kinase.
 
0.876
SDI97355.1
PAS domain S-box-containing protein.
 
0.873
SDI67587.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.851
SDI97325.1
Response regulator receiver domain-containing protein.
  
  0.850
SDJ06031.1
Two-component system, OmpR family, response regulator ResD.
 
  0.850
Your Current Organism:
Paenibacillus typhae
NCBI taxonomy Id: 1174501
Other names: CGMCC 1.11012, DSM 25190, P. typhae, Paenibacillus sp. enrichment culture clone xj7, Paenibacillus sp. xj7, Paenibacillus typhae Kong et al. 2013, strain xj7
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