STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK80234.1Succinyl-diaminopimelate desuccinylase. (426 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.912
argD
Acetylornithine aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.902
SDJ74268.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 0.716
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 0.670
SDK79888.1
Protein of unknown function.
 
     0.661
SDH99573.1
LL-diaminopimelate aminotransferase.
    
 0.654
SDJ31240.1
Aminotransferase.
    
 0.654
SDJ59593.1
LL-diaminopimelate aminotransferase apoenzyme.
    
 0.654
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.648
SDK80309.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.631
Your Current Organism:
Paenibacillus typhae
NCBI taxonomy Id: 1174501
Other names: CGMCC 1.11012, DSM 25190, P. typhae, Paenibacillus sp. enrichment culture clone xj7, Paenibacillus sp. xj7, Paenibacillus typhae Kong et al. 2013, strain xj7
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.